ExpressionSieve™ is a microarray
data analysis, data mining and data visualization software package.
Provide multiple clustering algorithms and similarity metrics
Allow flexible data preprocessing - missing value treatment,
data transformation, data filtering
Support saving all analysis results - images/text files
for publications and for further analysis
Enable expression analysis/understanding in the context
of gene ontology and pathway
Assist expression pattern discovery with intuitive visualizations
Memory/speed efficient and platform independent implementation
Cost less
ExpressionSieve™ combines the best practice of statistical analysis,
software engineering, bioinformatics and complex data visualization. ExpressionSieve™
is aimed at providing not only set of basic tools for expression analysis,
but also tools bridging between expression data and other domain data, such
as gene ontology, pathway, genomics, literature, biochemical assay, clinical
data, mass spectrometry data, etc. ExpressionSieve™ is a versatile tool
for disease research, drug discovery, and system biology. Find more detail
information from product material
here
.
GeneOntologyBrowser™ /
YeastFunctionCatalogBrowser™
enables user browse through the part of Gene Ontology/Yeast
Function Catolog, which is relevant to their genes of interest. Starting
from a set of genes, whether they are from clustering analysis, sequencing
analysis etc., GeneOntologyBrowser™/
YeastFunctionCatalogBrowserTM
quickly shows user the partition of this set of genes by gene
ontology classification/yeast function catalog, in addition, direct attention
to the classification terms that are mostly enriched in this set of genes.
PathwayBrowser™ enables user
to color each gene on a pathway with expression value. By analyzing multiple
pathways and multiple expression data sets at the same time, user is able
to discover the impact of certain treatment/condition on biological
pathways.
These browsers are part of
the ExpressionSieve™, however, can also be used/sold separately.
ExpressionSieve TM Lite
is available for free download
here
. This version has all the basic functions, without the three browsers
and data set limitations are either no.genes X no.experiments < 10,000
or (no.genes < 2000 and no.experiments < 20). We would like you to
cite our product and our website in your publications if you have used
it. Please check back for updated version, and check out product manual
and tutorials here
.